modENCODE Data Quality Standards

These documents describe project-wide quality control standards applied to specific modENCODE experiment types.

• QC Standards for chromatin IP (ChIP-chip and ChIP-seq)
• QC Standards for whole genome shotgun sequencing (RNA-seq)
• QC Standards for RNA-binding protein immunoprecipitation (RIP)

modENCODE Data Gentle Introduction Guides

• Transcription Factors and other Chromatin Protein Binding Sites

modENCODE tools

• modENCODE Frequently Asked Questions
• modMine quick start guide

Other Documents

Publications, press releases and policy documents can be found at the National Human Genome Research Institute.